2A07 Transcription Dna date Jun 16, 2005
title Crystal Structure Of Foxp2 Bound Specifically To Dna.
authors J.C.Stroud, Y.Wu, D.L.Bates, A.Han, K.Nowick, S.Paabo, H.Tong, L.Chen
compound source
Molecule: 5'- D(Apapcptpaptpgpapapapcpapapaptptptptpcp Cpt)-3';
Chain: A, C
Engineered: Yes
Other_details: Promoter Element Of A Foxp Regulated Gene, Plus Strand;
Synthetic: Yes
Other_details: Dna Is Synthesized By Solid Phase Method

Molecule: 5'- D(Tptpapgpgpapapapaptptptpgptptptpcpaptp Apg)-3';
Chain: B, D
Engineered: Yes
Other_details: Promoter Element Of A Foxp Regulated Gene, Minus Strand;

Synthetic: Yes
Other_details: Dna Is Synthesized By Solid Phase Method

Molecule: Forkhead Box Protein P2
Chain: F, G, H, I, J, K
Fragment: Foxp2 Forkhead Domain
Synonym: Cag Repeat Protein 44, Trinucleotide Repeat- Containing Gene 10 Protein;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Foxp2, Cagh44, Tnrc10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.542 124.210 67.666 90.00 110.81 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, F, J, K, I, G


Primary referenceStructure of the forkhead domain of FOXP2 bound to DNA., Stroud JC, Wu Y, Bates DL, Han A, Nowick K, Paabo S, Tong H, Chen L, Structure. 2006 Jan;14(1):159-66. PMID:16407075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (2a07.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2A07
  • CSU: Contacts of Structural Units for 2A07
  • Likely Quarternary Molecular Structure file(s) for 2A07
  • Structure Factors (1078 Kb)
  • Retrieve 2A07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A07 from S2C, [Save to disk]
  • Re-refined 2a07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A07 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A07
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2A07, from MSDmotif at EBI
  • Fold representative 2a07 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a07_K] [2a07_F] [2a07_J] [2a07_A] [2a07_C] [2a07_D] [2a07_I] [2a07_B] [2a07_G] [2a07] [2a07_H]
  • SWISS-PROT database: [O15409]
  • Domain organization of [FOXP2_HUMAN] by SWISSPFAM
  • Domain found in 2A07: [FH ] by SMART
  • Other resources with information on 2A07
  • Community annotation for 2A07 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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