2AAZ Transferase date Jul 14, 2005
title Cryptococcus Neoformans Thymidylate Synthase Complexed With And An Antifolate
authors J.S.Finer-Moore, A.C.Anderson, R.H.O'Neil, M.P.Costi, S.Ferrari, J.Krucinski, R.M.Stroud
compound source
Molecule: Thymidylate Synthase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Synonym: Ts, Tsase
Ec: 2.1.1.45
Engineered: Yes
Organism_scientific: Filobasidiella Neoformans
Organism_taxid: 5207
Gene: Tmp1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet Cnts
symmetry Space Group: C 1 2 1
R_factor 0.290 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
179.400 179.500 209.100 90.00 89.80 90.00
method X-Ray Diffraction, 4 Modelsresolution 2.08 Å
ligand CB3, UMP enzyme Transferase E.C.2.1.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G


Primary referenceThe structure of Cryptococcus neoformans thymidylate synthase suggests strategies for using target dynamics for species-specific inhibition., Finer-Moore JS, Anderson AC, O'Neil RH, Costi MP, Ferrari S, Krucinski J, Stroud RM, Acta Crystallogr D Biol Crystallogr. 2005 Oct;61(Pt 10):1320-34. Epub 2005, Sep 28. PMID:16204883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3198 Kb) [Save to disk]
  • Biological Unit Coordinates (2aaz.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (2aaz.pdb2.gz) 115 Kb
  • Biological Unit Coordinates (2aaz.pdb3.gz) 115 Kb
  • Biological Unit Coordinates (2aaz.pdb4.gz) 114 Kb
  • Biological Unit Coordinates (2aaz.pdb5.gz) 105 Kb
  • Biological Unit Coordinates (2aaz.pdb6.gz) 105 Kb
  • Biological Unit Coordinates (2aaz.pdb7.gz) 105 Kb
  • Biological Unit Coordinates (2aaz.pdb8.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 2AAZ
  • CSU: Contacts of Structural Units for 2AAZ
  • Structure Factors (3305 Kb)
  • Retrieve 2AAZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AAZ from S2C, [Save to disk]
  • View 2AAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AAZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AAZ, from MSDmotif at EBI
  • Fold representative 2aaz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aaz_O] [2aaz_K] [2aaz_P] [2aaz_G] [2aaz_L] [2aaz] [2aaz_H] [2aaz_D] [2aaz_A] [2aaz_M] [2aaz_B] [2aaz_I] [2aaz_N] [2aaz_J] [2aaz_C] [2aaz_E] [2aaz_F]
  • SWISS-PROT database: [P45351]
  • Domain organization of [TYSY_CRYNE] by SWISSPFAM
  • Other resources with information on 2AAZ
  • Community annotation for 2AAZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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