2AGH Transcription date Jul 26, 2005
title Structural Basis For Cooperative Transcription Factor Binding To The Cbp Coactivator
authors R.N.De Guzman, N.K.Goto, H.J.Dyson, P.E.Wright
compound source
Molecule: Myb Proto-Oncogene Protein
Chain: A
Synonym: C-Myb
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Myb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Crebbp Protein
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Cbp, Crebbp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Zinc Finger Protein Hrx
Chain: C
Synonym: All-1, Trithorax-Like Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mll, All1, Hrx, Htrx, Trx1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
methodSolution NMR
note 2AGH is a representative structure
Primary referenceStructural Basis for Cooperative Transcription Factor Binding to the CBP Coactivator., De Guzman RN, Goto NK, Dyson HJ, Wright PE, J Mol Biol 2005 Oct 5;. PMID:16253272
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (787 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2AGH
  • Original NMR restraints for 2AGH from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2AGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AGH from S2C, [Save to disk]
  • View 2AGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AGH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AGH, from MSDmotif at EBI
  • Fold representative 2agh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2agh] [2agh_C] [2agh_A] [2agh_B]
  • SWISS-PROT database: [P45481] [Q03164] [P06876]
  • Domain organization of [CBP_MOUSE] [MLL1_HUMAN] [MYB_MOUSE] by SWISSPFAM
  • Other resources with information on 2AGH
  • Community annotation for 2AGH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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