2AVD Transferase date Aug 29, 2005
title Crystal Structure Of Human Catechol-O-Methyltransferase Doma Containing 1
authors J.R.Min, H.Wu, H.Zeng, P.Loppnau, M.Sundstrom, C.H.Arrowsmith, A.M A.Bochkarev, A.N.Plotnikov, Structural Genomics Consortium (S
compound source
Molecule: Catechol-O-Methyltransferase
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bd Fusion-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 1 21 1
R_factor 0.172 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.882 65.222 61.799 90.00 102.66 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2avd.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2AVD
  • CSU: Contacts of Structural Units for 2AVD
  • Likely Quarternary Molecular Structure file(s) for 2AVD
  • Structure Factors (310 Kb)
  • Retrieve 2AVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AVD from S2C, [Save to disk]
  • Re-refined 2avd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2AVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AVD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AVD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2avd_A] [2avd_B] [2avd]
  • SWISS-PROT database: [Q86VU5]
  • Domain organization of [CMTD1_HUMAN] by SWISSPFAM
    • Other resources with information on 2AVD
  • Community annotation for 2AVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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