2B69 Lyase date Sep 30, 2005
title Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase
authors E.Ugochukwu, E.Dubinina, K.Kavanagh, M.Sundstrom, J.Weigelt, A.Ed C.Arrowsmith, F.Von Delft, U.Oppermann, Structural Genomics Co (Sgc)
compound source
Molecule: Udp-Glucuronate Decarboxylase 1
Chain: A
Fragment: Uxs1
Ec: 4.1.1.35
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uxs1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 (De3) Methionine Auxotroph
Expression_system_vector_type: P11
symmetry Space Group: P 1 2 1
R_factor 0.134 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.000 45.000 85.000 90.00 97.00 90.00
method X-Ray Diffractionresolution 1.21 Å
ligand MSE, NAD, UDP enzyme Lyase E.C.4.1.1.35 BRENDA
note 2B69 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2b69.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 2B69
  • CSU: Contacts of Structural Units for 2B69
  • Likely Quarternary Molecular Structure file(s) for 2B69
  • Structure Factors (711 Kb)
  • Retrieve 2B69 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B69 from S2C, [Save to disk]
  • Re-refined 2b69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B69 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B69
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2B69, from MSDmotif at EBI
  • Fold representative 2b69 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b69_A] [2b69]
  • SWISS-PROT database: [Q8NBZ7]
  • Domain organization of [UXS1_HUMAN] by SWISSPFAM
  • Other resources with information on 2B69
  • Community annotation for 2B69 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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