2BHL Oxidoreductase date Jan 13, 2005
title X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase (Deletion Variant) Complexed With Glucose-6-Phosphate
authors M.Kotaka, S.Gover, V.M.S.Lam, M.J.Adams
compound source
Molecule: Glucose-6-Phosphate 1-Dehydrogenase
Chain: A, B
Synonym: G6pd
Ec: 1.1.1.49
Engineered: Yes
Mutation: Yes
Other_details: The 25 N-Terminal Residues Have Been Removed And The First Residue Is Valine, Not Histidine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Df213
Expression_system_vector: Ptrc99a
Expression_system_plasmid: Ptrc99adg6pd
symmetry Space Group: C 2 2 21
R_factor 0.212 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.552 179.527 137.938 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.9 Å
ligand BG6, GOL enzyme Oxidoreductase E.C.1.1.1.49 BRENDA
related structures by homologous chain: 1QKI, 2BH9
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural studies of glucose-6-phosphate and NADP+ binding to human glucose-6-phosphate dehydrogenase., Kotaka M, Gover S, Vandeputte-Rutten L, Au SW, Lam VM, Adams MJ, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):495-504. Epub 2005, Apr 20. PMID:15858258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (2bhl.pdb1.gz) 319 Kb
  • LPC: Ligand-Protein Contacts for 2BHL
  • CSU: Contacts of Structural Units for 2BHL
  • Likely Quarternary Molecular Structure file(s) for 2BHL
  • Structure Factors (467 Kb)
  • Retrieve 2BHL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BHL from S2C, [Save to disk]
  • Re-refined 2bhl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BHL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BHL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BHL, from MSDmotif at EBI
  • Fold representative 2bhl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bhl_B] [2bhl_A] [2bhl]
  • SWISS-PROT database: [P11413]
  • Domain organization of [G6PD_HUMAN] by SWISSPFAM
  • Other resources with information on 2BHL
  • Community annotation for 2BHL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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