2BH9	Oxidoreductase	date	Jan 08, 2005
title	X-Ray Structure Of A Deletion Variant Of Human Glucose 6- Phosphate Dehydrogenase Complexed With Structural And Coenzyme Nadp
authors	S.Gover, L.Vandeputte-Rutten, S.W.N.Au, M.J.Adams
compound		source
Molecule: Glucose-6-Phosphate 1-Dehydrogenase Chain: A Fragment: Residues 26-514 Synonym: G6pd Ec: 1.1.1.49 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dr612 Expression_system_plasmid: Pkkg6pd
symmetry	Space Group: F 2 2 2	R_factor 0.196 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.760 172.480 217.220 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.5 Å
ligand	GOL, NAP	enzyme	Oxidoreductase E.C.1.1.1.49 BRENDA
related structures	by homologous chain: 2BHL
Gene Ontology	Chain Function Process Component A glucose-6-phosphate dehydrog... glucose binding oxidoreductase activity carbohydrate binding protein homodimerization act... NADP binding cytokine production carbohydrate metabolic proce... glucose metabolic process pentose-phosphate shunt lipid metabolic process cholesterol biosynthetic pro... NADPH regeneration glutathione metabolic proces... pentose-phosphate shunt, oxi... negative regulation of prote... response to organic cyclic c... pentose biosynthetic process... response to food cellular response to oxidati... erythrocyte maturation small molecule metabolic pro... response to ethanol ribose phosphate biosyntheti... glucose 6-phosphate metaboli... oxidation-reduction process nucleus cytoplasm centrosome cytosol internal side of plasma memb... intracellular membrane-bound...
Primary reference	Structural studies of glucose-6-phosphate and NADP+ binding to human glucose-6-phosphate dehydrogenase., Kotaka M, Gover S, Vandeputte-Rutten L, Au SW, Lam VM, Adams MJ, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):495-504. Epub 2005, Apr 20. PMID:15858258

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (2bh9.pdb1.gz) 170 Kb LPC: Ligand-Protein Contacts for 2BH9 CSU: Contacts of Structural Units for 2BH9 Likely Quarternary Molecular Structure file(s) for 2BH9 Retrieve 2BH9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BH9 from S2C, [Save to disk]

View 2BH9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2BH9

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2BH9, from MSDmotif at EBI Fold representative 2bh9 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bh9_A] SWISS-PROT database: [P11413] Domain organization of [G6PD_HUMAN] by SWISSPFAM Alignments of the sequence of 2BH9 with the sequences similar proteins can be viewed for 2BH9's classification [G6PD_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [G6PD_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2BH9

Community annotation for 2BH9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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