2BH9 Oxidoreductase date Jan 08, 2005
title X-Ray Structure Of A Deletion Variant Of Human Glucose 6- Phosphate Dehydrogenase Complexed With Structural And Coenzyme Nadp
authors S.Gover, L.Vandeputte-Rutten, S.W.N.Au, M.J.Adams
compound source
Molecule: Glucose-6-Phosphate 1-Dehydrogenase
Chain: A
Fragment: Residues 26-514
Synonym: G6pd
Ec: 1.1.1.49
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dr612
Expression_system_plasmid: Pkkg6pd
symmetry Space Group: F 2 2 2
R_factor 0.196 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.760 172.480 217.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.5 Å
ligand GOL, NAP enzyme Oxidoreductase E.C.1.1.1.49 BRENDA
related structures by homologous chain: 2BHL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural studies of glucose-6-phosphate and NADP+ binding to human glucose-6-phosphate dehydrogenase., Kotaka M, Gover S, Vandeputte-Rutten L, Au SW, Lam VM, Adams MJ, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):495-504. Epub 2005, Apr 20. PMID:15858258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2bh9.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 2BH9
  • CSU: Contacts of Structural Units for 2BH9
  • Likely Quarternary Molecular Structure file(s) for 2BH9
  • Retrieve 2BH9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BH9 from S2C, [Save to disk]
  • View 2BH9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BH9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BH9, from MSDmotif at EBI
  • Fold representative 2bh9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bh9] [2bh9_A]
  • SWISS-PROT database: [P11413]
  • Domain organization of [G6PD_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2BH9 with the sequences similar proteins can be viewed for 2BH9's classification [G6PD_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [G6PD_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2BH9
  • Community annotation for 2BH9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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