2C2V Chaperone date Sep 30, 2005
title Crystal Structure Of The Chip-Ubc13-Uev1a Complex
authors M.Zhang, S.M.Roe, L.H.Pearl
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2 N
Chain: B, E, H, K
Synonym: Bendless-Like Ubiquitin-Conjugating Enzyme,E2 Ubiq Conjugating Enzyme N,Ubc13,Ubch13,Ubiquitin Carrier Protein Ubiquitin-Protein Ligase N;
Ec: 2.3.2.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2n, Blu
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ubiquitin-Conjugating Enzyme E2 Variant 1
Chain: C, F, I, L
Synonym: Uev-1,Croc-1,Traf6-Regulated Ikk Activator 1 Beta
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2v1, Croc1, Ube2v, Uev1, Pokcl.19
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Stip1 Homology And U Box-Containing Protein 1
Chain: S, T, U, V
Fragment: C-Teminal Domain, Residues 227-304
Synonym: Carboxy Terminus Of Hsp70-Interacting Protein,E3 U Protein Ligase Chip,Ring-Type E3 Ubiquitin Transferase Chip
Ec: 2.3.2.27
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Stub1, Chip
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.214 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.310 69.991 204.477 90.00 106.95 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Transferase E.C.2.3.2.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, C, I, L


K, E, B, H


S, T, V, U


Primary referenceChaperoned ubiquitylation--crystal structures of the CHIP U box E3 ubiquitin ligase and a CHIP-Ubc13-Uev1a complex., Zhang M, Windheim M, Roe SM, Peggie M, Cohen P, Prodromou C, Pearl LH, Mol Cell. 2005 Nov 23;20(4):525-38. PMID:16307917
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (2c2v.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (2c2v.pdb2.gz) 107 Kb
  • CSU: Contacts of Structural Units for 2C2V
  • Likely Quarternary Molecular Structure file(s) for 2C2V
  • Structure Factors (391 Kb)
  • Retrieve 2C2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C2V from S2C, [Save to disk]
  • Re-refined 2c2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C2V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2C2V, from MSDmotif at EBI
  • Fold representative 2c2v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c2v_B] [2c2v_H] [2c2v_E] [2c2v_T] [2c2v_I] [2c2v_K] [2c2v] [2c2v_U] [2c2v_F] [2c2v_S] [2c2v_L] [2c2v_V] [2c2v_C]
  • SWISS-PROT database: [Q9WUD1] [Q13404] [P61088]
  • Domain organization of [STUB1_MOUSE] [UB2V1_HUMAN] [UBE2N_HUMAN] by SWISSPFAM
  • Domains found in 2C2V: [UBCc] [Ubox ] by SMART
  • Other resources with information on 2C2V
  • Community annotation for 2C2V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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