2CFV Hydrolase date Feb 23, 2006
title Crystal Structure Of Human Protein Tyrosine Phosphatase Rece J
authors J.E.Debreczeni, A.J.Barr, J.Eswaran, E.Ugochukwu, M.Sundstrom, J. C.Arrowsmith, A.Edwards, S.Knapp
compound source
Molecule: Human Protein Tyrosine Phosphatase Receptor Type
Chain: A
Fragment: Residues 1019-1311
Synonym: Protein-Tyrosine Phosphatase Eta, R-Ptp-Eta, Hptp Protein-Tyrosine Phosphatase Receptor Type J, Density-Enhan Phosphatase 1, Dep-1, Cd14 8 Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pnic28-Bsa4
symmetry Space Group: H 3
R_factor 0.201 R_Free 0.250
length a length b length c angle alpha angle beta angle gamma
86.060 86.060 119.540 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CL, NI enzyme Hydrolase E.C. BRENDA

Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2cfv.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 2CFV
  • CSU: Contacts of Structural Units for 2CFV
  • Likely Quarternary Molecular Structure file(s) for 2CFV
  • Structure Factors (162 Kb)
  • Retrieve 2CFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CFV from S2C, [Save to disk]
  • Re-refined 2cfv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CFV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CFV, from MSDmotif at EBI
  • Fold representative 2cfv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cfv] [2cfv_A]
  • SWISS-PROT database: [Q12913]
  • Domain organization of [PTPRJ_HUMAN] by SWISSPFAM
  • Domain found in 2CFV: [PTPc ] by SMART
  • Other resources with information on 2CFV
  • Community annotation for 2CFV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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