2CK0 Immunoglobulin date Jun 13, 1999
title Anti-Anti-Idiotypic Antibody Against Human Angiotensin II, C With A Synthetic Cyclic Peptide
authors Y.H.Pan, L.M.Amzel
compound source
Molecule: Protein (Immunoglobulin; Light Chain)
Chain: L
Fragment: Fab Fragment
Other_details: Igg1, Kappa
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: Hybridoma

Molecule: Protein (Immunoglobulin; Heavy Chain)
Chain: H
Fragment: Fab Fragment
Other_details: Igg1, Kappa
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: Hybridoma

Molecule: Protein (11-Mer; Cyclic Peptide)
Chain: P
Other_details: Synthetic
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Cyclic Peptide, Synthetic
symmetry Space Group: P 43 21 2
R_factor 0.200 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.220 84.220 142.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1KCU, 1OAK, 2HRP
Gene
Ontology
ChainFunctionProcessComponent
L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2ck0.pdb1.gz) 69 Kb
  • CSU: Contacts of Structural Units for 2CK0
  • Likely Quarternary Molecular Structure file(s) for 2CK0
  • Retrieve 2CK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CK0 from S2C, [Save to disk]
    • View 2CK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CK0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CK0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2ck0h1, region H:1-106 [Jmol] [rasmolscript] [script source]
        - Domain d2ck0h2, region H:107-216 [Jmol] [rasmolscript] [script source]
        - Domain d2ck0l1, region L:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d2ck0l2, region L:118-210 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ck0_H] [2ck0] [2ck0_L] [2ck0_P]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 2CK0: [IG_like] [IGv ] by SMART
    • Other resources with information on 2CK0
  • Community annotation for 2CK0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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