2HRP Complex (Immunoglobulin Peptide) date Dec 27, 1996
title Antigen-Antibody Complex
authors J.Lescar, G.A.Bentley
compound source
Molecule: Monoclonal Antibody F11.2.32
Chain: L, M
Fragment: Fab Fragment
Synonym: Immunoglobulin, Igg1
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Cell_line: Hybridoma

Molecule: Monoclonal Antibody F11.2.32
Chain: H, N
Fragment: Fab Fragment
Synonym: Immunoglobulin, Igg1

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Cell_line: Hybridoma

Molecule: Hiv-1 Protease Peptide
Chain: P, Q
Fragment: Residues 36 - 46
Engineered: Yes

symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.300 96.310 105.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1KCU, 2CK0, 2PCP
Primary referenceThree-dimensional structure of an Fab-peptide complex: structural basis of HIV-1 protease inhibition by a monoclonal antibody., Lescar J, Stouracova R, Riottot MM, Chitarra V, Brynda J, Fabry M, Horejsi M, Sedlacek J, Bentley GA, J Mol Biol 1997 Apr 18;267(5):1207-22. PMID:9150407
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (2hrp.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (2hrp.pdb2.gz) 75 Kb
  • Biological Unit Coordinates (2hrp.pdb3.gz) 148 Kb
  • CSU: Contacts of Structural Units for 2HRP
  • Likely Quarternary Molecular Structure file(s) for 2HRP
  • Structure Factors (385 Kb)
  • Retrieve 2HRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HRP from S2C, [Save to disk]
  • Re-refined 2hrp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HRP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HRP, from MSDmotif at EBI
  • Genome occurence of 2HRP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2hrph1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d2hrph2, region H:114-214 [Jmol] [rasmolscript] [script source]
        - Domain d2hrpl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d2hrpl2, region L:108-211 [Jmol] [rasmolscript] [script source]
        - Domain d2hrpm1, region M:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d2hrpm2, region M:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d2hrpn1, region N:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d2hrpn2, region N:114-212 [Jmol] [rasmolscript] [script source]
  • Fold representative 2hrp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hrp_Q] [2hrp_L] [2hrp_P] [2hrp_H] [2hrp_N] [2hrp] [2hrp_M]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 2HRP: [IG_like] [IGv ] by SMART
  • Other resources with information on 2HRP
  • Community annotation for 2HRP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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