2PCP	Immunoglobulin	date	Jun 02, 1998
title	Antibody Fab Complexed With Phencyclidine
authors	K.Lim, S.M.Owens, L.Arnold, J.C.Sacchettini, D.S.Linthicum
compound		source
Molecule: Immunoglobulin Chain: A, C Fragment: Fab Other_details: Complexed With 1-(1-Phenylcyclohexyl) Piperi Or Phencyclidine);		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Immunoglobulin Chain: B, D Fragment: Fab Other_details: Complexed With 1-(1-Phenylcyclohexyl) Piperi Or Phencyclidine)		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
symmetry	Space Group: P 1	R_factor 0.196 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.460 67.720 68.040 62.11 84.66 83.17
method	X-Ray Diffraction	resolution	2.20 Å
ligand	1PC	enzyme
related structures	by homologous chain: 1AY1, 2HRP
Primary reference	Crystal structure of monoclonal 6B5 Fab complexed with phencyclidine., Lim K, Owens SM, Arnold L, Sacchettini JC, Linthicum DS, J Biol Chem 1998 Oct 30;273(44):28576-82. PMID:9786848

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (2pcp.pdb1.gz) 74 Kb Biological Unit Coordinates (2pcp.pdb2.gz) 74 Kb LPC: Ligand-Protein Contacts for 2PCP CSU: Contacts of Structural Units for 2PCP Likely Quarternary Molecular Structure file(s) for 2PCP Structure Factors (352 Kb) Retrieve 2PCP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PCP from S2C, [Save to disk] Re-refined 2pcp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PCP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PCP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PCP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2pcpa1, region A:1-107 [Jmol] [rasmolscript] [script source]     - Domain d2pcpa2, region A:108-211 [Jmol] [rasmolscript] [script source]     - Domain d2pcpb1, region B:1-113 [Jmol] [rasmolscript] [script source]     - Domain d2pcpb2, region B:114-226 [Jmol] [rasmolscript] [script source]     - Domain d2pcpc1, region C:1-107 [Jmol] [rasmolscript] [script source]     - Domain d2pcpc2, region C:108-211 [Jmol] [rasmolscript] [script source]     - Domain d2pcpd1, region D:1-113 [Jmol] [rasmolscript] [script source]     - Domain d2pcpd2, region D:114-226 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pcp_C] [2pcp] [2pcp_A] [2pcp_D] [2pcp_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2PCP: [IG_like] [IGv ] by SMART

Other resources with information on 2PCP

Community annotation for 2PCP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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