2D5L		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis., Ito K, Nakajima Y, Xu Y, Yamada N, Onohara Y, Ito T, Matsubara F, Kabashima T, Nakayama K, Yoshimoto T, J Mol Biol. 2006 Sep 15;362(2):228-40. Epub 2006 Aug 17. PMID:16914159

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk] Biological Unit Coordinates (2d5l.pdb1.gz) 223 Kb LPC: Ligand-Protein Contacts for 2D5L CSU: Contacts of Structural Units for 2D5L Likely Quarternary Molecular Structure file(s) for 2D5L Structure Factors (1492 Kb) Retrieve 2D5L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D5L from S2C, [Save to disk] Re-refined 2d5l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D5L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d5l] [2d5l_A] SWISS-PROT database: [Q7MUW6]

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