2DE0	Transferase	date	Feb 07, 2006
title	Crystal Structure Of Human Alpha 1,6-Fucosyltransferase, Fut
authors	N.Taniguchi, H.Ihara, A.Nakagawa
compound		source
Molecule: Alpha-(1,6)-Fucosyltransferase Chain: X Fragment: Residues 68-575 Synonym: Glycoprotein 6-Alpha-L-Fucosyltransferase, Gdp-Fuc Glycoprotein Fucosyltransferase, Gdp-L-Fuc: N-Acetyl-Beta-D- Glucosaminide Alpha1,6-Fucosyltransferase, Alpha1-6fuct, Fucosyltransferase 8; Ec: 2.4.1.68 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf21 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67b
symmetry	Space Group: P 65 2 2	R_factor 0.220 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.030 90.030 380.700 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.61 Å
ligand		enzyme	Transferase E.C.2.4.1.68 BRENDA
Gene Ontology	Chain Function Process Component X
Primary reference	Crystal Structure of Mammalian {alpha}1,6-Fucosyltransferase, FUT8., Ihara H, Ikeda Y, Toma S, Wang X, Suzuki T, Gu J, Miyoshi E, Tsukihara T, Honke K, Matsumoto A, Nakagawa A, Taniguchi N, Glycobiology. 2006 Dec 15;. PMID:17172260

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (2de0.pdb1.gz) 156 Kb CSU: Contacts of Structural Units for 2DE0 Likely Quarternary Molecular Structure file(s) for 2DE0 Structure Factors (237 Kb) Retrieve 2DE0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DE0 from S2C, [Save to disk] Re-refined 2de0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DE0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DE0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DE0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2de0] [2de0_X] SWISS-PROT database: [Q9BYC5] Domain organization of [FUT8_HUMAN] by SWISSPFAM Domain found in 2DE0: [SH3 ] by SMART

Other resources with information on 2DE0

Community annotation for 2DE0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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