OCA Atlas for 2DG2

2DG2

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, MSE, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, E, A, F, C, D		membrane raft distribution

Primary reference

Biochemical and structural characterization of apolipoprotein A-I binding protein, a novel phosphoprotein with a potential role in sperm capacitation., Jha KN, Shumilin IA, Digilio LC, Chertihin O, Zheng H, Schmitz G, Visconti PE, Flickinger CJ, Minor W, Herr JC, Endocrinology. 2008 May;149(5):2108-20. Epub 2008 Jan 17. PMID:18202122

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]

Biological Unit Coordinates (2dg2.pdb1.gz) 76 Kb

Biological Unit Coordinates (2dg2.pdb2.gz) 76 Kb

Biological Unit Coordinates (2dg2.pdb3.gz) 76 Kb

LPC: Ligand-Protein Contacts for 2DG2

CSU: Contacts of Structural Units for 2DG2

Likely Quarternary Molecular Structure file(s) for 2DG2

Structure Factors (1664 Kb)

Retrieve 2DG2 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2DG2 from S2C, [Save to disk]

Re-refined 2dg2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DG2 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dg2] [2dg2_A] [2dg2_B] [2dg2_C] [2dg2_D] [2dg2_E] [2dg2_F]

SWISS-PROT database: [Q8K4Z3]

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