2DYL Transferase date Sep 15, 2006
title Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d)
authors M.Kukimoto-Niino, T.Takagi, T.Kaminishi, T.Uchikubo-Kamo, T.Terada, O.Matsuzaki, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase Kinase 7;
Chain: A
Fragment: Kinase Domain, Residues 101-405
Synonym: Mitogen-Activated Protein Kinase Kinase 7 Gamma 1, Map Kinase Kinase 7, Mapkk 7, Mapkerk Kinase 7, Jnk- Activating Kinase 2, C-Jun N-Terminal Kinase Kinase 2, Jnk Kinase 2, Jnkk 2;
Ec: 2.7.12.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px060911-21
Other_details: Cell Free Protein Synthesis
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.552 69.635 84.035 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand
enzyme Transferase E.C.2.7.12.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2dyl.pdb1.gz) 46 Kb
  • CSU: Contacts of Structural Units for 2DYL
  • Likely Quarternary Molecular Structure file(s) for 2DYL
  • Structure Factors (110 Kb)
  • Retrieve 2DYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DYL from S2C, [Save to disk]
  • Re-refined 2dyl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DYL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DYL, from MSDmotif at EBI
  • Fold representative 2dyl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dyl_A] [2dyl]
  • SWISS-PROT database: [O14733]
  • Domain organization of [MP2K7_HUMAN] by SWISSPFAM
  • Domain found in 2DYL: [S_TKc ] by SMART
  • Other resources with information on 2DYL
  • Community annotation for 2DYL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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