2E0A	Transferase	date	Oct 03, 2006
title	Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4 I With Amppnp
authors	M.Kukimoto-Niino, A.Tokmakov, T.Terada, I.Shiromizu, M.Kawamoto, T.Matsusue, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Pyruvate Dehydrogenase Kinase Isozyme 4 Chain: A, B Fragment: Residues 20-411 Synonym: Pyruvate Dehydrogenase Kinase 4 Ec: 2.7.11.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pbluebac4.5
symmetry	Space Group: P 1 21 1	R_factor 0.196 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.121 68.456 79.755 90.00 101.05 90.00
method	X-Ray Diffraction	resolution	1.86 Å
ligand	ANP, MG	enzyme	Transferase E.C.2.7.11.2 BRENDA
Gene Ontology	Chain Function Process Component A, B protein kinase activity protein serine/threonine kin... pyruvate dehydrogenase (acet...
Primary reference	Inhibitor-bound structures of human pyruvate dehydrogenase kinase 4., Kukimoto-Niino M, Tokmakov A, Terada T, Ohbayashi N, Fujimoto T, Gomi S, Shiromizu I, Kawamoto M, Matsusue T, Shirouzu M, Yokoyama S, Acta Crystallogr D Biol Crystallogr. 2011 Sep;67(Pt 9):763-73. doi:, 10.1107/S090744491102405X. Epub 2011 Aug 9. PMID:21904029

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (2e0a.pdb1.gz) 120 Kb LPC: Ligand-Protein Contacts for 2E0A CSU: Contacts of Structural Units for 2E0A Likely Quarternary Molecular Structure file(s) for 2E0A Structure Factors (519 Kb) Retrieve 2E0A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2E0A from S2C, [Save to disk] Re-refined 2e0a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2E0A

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2E0A, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2e0a_B] [2e0a_A] [2e0a] SWISS-PROT database: [Q16654] Domain organization of [PDK4_HUMAN] by SWISSPFAM Domain found in 2E0A: [HATPase_c ] by SMART

Other resources with information on 2E0A

Community annotation for 2E0A at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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