2E2S Toxin date Nov 17, 2006
title Solution Structure Of Agelenin, An Insecticidal Peptide From Of Agelena Opulenta
authors N.Yamaji
compound source
Molecule: Agelenin
Chain: A
 Organism_scientific: Allagelena Opulenta
Organism_taxid: 29934
methodSolution NMR
ligand NH2 enzyme
note 2E2S is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceSolution structure of agelenin, an insecticidal peptide isolated from the spider Agelena opulenta, and its structural similarities to insect-specific calcium channel inhibitors., Yamaji N, Sugase K, Nakajima T, Miki T, Wakamori M, Mori Y, Iwashita T, FEBS Lett. 2007 Aug 7;581(20):3789-94. Epub 2007 Jul 10. PMID:17644092
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (2e2s.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 2E2S
  • CSU: Contacts of Structural Units for 2E2S
  • Original NMR restraints for 2E2S from PDB
  • Retrieve 2E2S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E2S from S2C, [Save to disk]
    • View 2E2S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2E2S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E2S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e2s_A] [2e2s]
  • SWISS-PROT database: [P31328]
  • Domain organization of [TXAG_ALLOP] by SWISSPFAM
    • Other resources with information on 2E2S
  • Community annotation for 2E2S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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