2E3H Structural Protein date Nov 26, 2006
title Crystal Structure Of The Clip-170 Cap-Gly Domain 2
authors R.Maesaki, T.Hakoshima
compound source
Molecule: Restin
Chain: A
Fragment: Cap-Gly Domain 2
Synonym: Clip-170, Cytoplasmic Linker Protein 170 Alpha-2, Reed- Sternberg Intermediate Filament-Associated Protein, Cytoplasmic Linker Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clip-170
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t
symmetry Space Group: P 32 2 1
R_factor 0.192 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.937 54.937 57.270 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.45 Å
note 2E3H is a representative structure
Primary referenceStructural basis for tubulin recognition by cytoplasmic linker protein 170 and its autoinhibition., Mishima M, Maesaki R, Kasa M, Watanabe T, Fukata M, Kaibuchi K, Hakoshima T, Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10346-51. Epub 2007 Jun 11. PMID:17563362
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (2e3h.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2E3H
  • Likely Quarternary Molecular Structure file(s) for 2E3H
  • Structure Factors (126 Kb)
  • Retrieve 2E3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E3H from S2C, [Save to disk]
  • Re-refined 2e3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E3H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2E3H, from MSDmotif at EBI
  • Fold representative 2e3h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e3h] [2e3h_A]
  • SWISS-PROT database: [P30622]
  • Domain organization of [CLIP1_HUMAN] by SWISSPFAM
  • Domain found in 2E3H: [CAP_GLY ] by SMART
  • Other resources with information on 2E3H
  • Community annotation for 2E3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science