2E8V	Transferase	date	Jan 23, 2007
title	S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In Compl Product Ggpp (P21)
authors	C.K.M.Chen, R.T.Guo, T.P.Ko, W.Y.Jeng, T.H.Chang, P.H.Liang, E.Ol A.H.J.Wang
compound		source
Molecule: Geranylgeranyl Pyrophosphate Synthetase Chain: A, B Synonym: Ggpp Synthetase, Ggppsase, Geranylgeranyl Diphosph Synthase, Bet2 Suppressor Protein 1; Ec: 2.5.1.30 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32lic
symmetry	Space Group: P 1 21 1	R_factor 0.198 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.346 48.817 93.235 90.00 111.59 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GRG	enzyme	Transferase E.C.2.5.1.30 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Bisphosphonates target multiple sites in both cis- and trans-prenyltransferases., Guo RT, Cao R, Liang PH, Ko TP, Chang TH, Hudock MP, Jeng WY, Chen CK, Zhang Y, Song Y, Kuo CJ, Yin F, Oldfield E, Wang AH, Proc Natl Acad Sci U S A. 2007 May 29;. PMID:17535895

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk] Biological Unit Coordinates (2e8v.pdb1.gz) 114 Kb LPC: Ligand-Protein Contacts for 2E8V CSU: Contacts of Structural Units for 2E8V Likely Quarternary Molecular Structure file(s) for 2E8V Structure Factors (615 Kb) Retrieve 2E8V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2E8V from S2C, [Save to disk] Re-refined 2e8v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2E8V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2E8V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2E8V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2e8v_A] [2e8v] [2e8v_B] SWISS-PROT database: [Q12051] Domain organization of [GGPPS_YEAST] by SWISSPFAM

Other resources with information on 2E8V

Community annotation for 2E8V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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