2EQ5 Isomerase date Mar 30, 2007
title Crystal Structure Of Hydantoin Racemase From Pyrococcus Hori
authors H.Mizutani, N.Kunishima, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: 228aa Long Hypothetical Hydantoin Racemase
Chain: A, B, C, D
Ec: 5.1.-.-
Engineered: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 65
R_factor 0.160 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.707 152.707 81.257 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Isomerase E.C.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (2eq5.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (2eq5.pdb2.gz) 67 Kb
  • CSU: Contacts of Structural Units for 2EQ5
  • Likely Quarternary Molecular Structure file(s) for 2EQ5
  • Structure Factors (451 Kb)
  • Retrieve 2EQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EQ5 from S2C, [Save to disk]
  • Re-refined 2eq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2EQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EQ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EQ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2eq5_D] [2eq5_C] [2eq5_A] [2eq5] [2eq5_B]
  • SWISS-PROT database: [O58781]
  • Domain organization of [O58781_PYRHO] by SWISSPFAM
  • Other resources with information on 2EQ5
  • Community annotation for 2EQ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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