2F8A Oxidoreductase date Dec 02, 2005
title Crystal Structure Of The Selenocysteine To Glycine Mutant Of Glutathione Peroxidase 1
authors K.L.Kavanagh, C.Johansson, C.Smee, O.Gileadi, F.Von Delft, J.Weig M.Sundstrom, A.Edwards, U.Oppermann, Structural Genomics Conso (Sgc)
compound source
Molecule: Glutathione Peroxidase 1
Chain: A, B
Fragment: Residues 12-196
Synonym: Gshpx-1, Gpx-1, Cellular Glutathione Peroxidase
Ec: 1.11.1.9
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpx1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet Derivative
symmetry Space Group: C 1 2 1
R_factor 0.138 R_Free 0.156
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.592 59.376 81.132 90.00 119.41 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MLA enzyme Oxidoreductase E.C.1.11.1.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity
  • glutathione peroxidase activ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2f8a.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 2F8A
  • CSU: Contacts of Structural Units for 2F8A
  • Likely Quarternary Molecular Structure file(s) for 2F8A
  • Structure Factors (1379 Kb)
  • Retrieve 2F8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F8A from S2C, [Save to disk]
  • Re-refined 2f8a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F8A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F8A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f8a_B] [2f8a] [2f8a_A]
  • SWISS-PROT database: [P07203]
  • Domain organization of [GPX1_HUMAN] by SWISSPFAM
  • Other resources with information on 2F8A
  • Community annotation for 2F8A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science