2F8Y Transcription date Dec 04, 2005
title Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution.
authors Y.Nam, P.Sliz, S.C.Blacklow
compound source
Molecule: Notch Homolog 1, Translocation-Associated (Drosophila);
Chain: A, B
Fragment: Ankyrin Repeat Domain, Repeats 1-7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest15
symmetry Space Group: P 65
R_factor 0.150 R_Free 0.187
length a length b length c angle alpha angle beta angle gamma
97.933 97.933 109.068 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.55 Å
ligand SO4 enzyme
A, B

Primary referenceStructural basis for cooperativity in recruitment of MAML coactivators to Notch transcription complexes., Nam Y, Sliz P, Song L, Aster JC, Blacklow SC, Cell. 2006 Mar 10;124(5):973-83. PMID:16530044
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2f8y.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2f8y.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2F8Y
  • CSU: Contacts of Structural Units for 2F8Y
  • Likely Quarternary Molecular Structure file(s) for 2F8Y
  • Structure Factors (621 Kb)
  • Retrieve 2F8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F8Y from S2C, [Save to disk]
  • Re-refined 2f8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F8Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F8Y, from MSDmotif at EBI
  • Fold representative 2f8y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f8y] [2f8y_B] [2f8y_A]
  • SWISS-PROT database: [P46531]
  • Domain organization of [NOTC1_HUMAN] by SWISSPFAM
  • Domain found in 2F8Y: [ANK ] by SMART
  • Other resources with information on 2F8Y
  • Community annotation for 2F8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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