2F8Y Transcription date Dec 04, 2005
title Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution.
authors Y.Nam, P.Sliz, S.C.Blacklow
compound source
Molecule: Notch Homolog 1, Translocation-Associated (Drosophila);
Chain: A, B
Fragment: Ankyrin Repeat Domain, Repeats 1-7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest15
symmetry Space Group: P 65
R_factor 0.150 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.933 97.933 109.068 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.55 Å
ligand SO4 enzyme
Primary referenceStructural basis for cooperativity in recruitment of MAML coactivators to Notch transcription complexes., Nam Y, Sliz P, Song L, Aster JC, Blacklow SC, Cell. 2006 Mar 10;124(5):973-83. PMID:16530044
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2f8y.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2f8y.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2F8Y
  • CSU: Contacts of Structural Units for 2F8Y
  • Likely Quarternary Molecular Structure file(s) for 2F8Y
  • Structure Factors (621 Kb)
  • Retrieve 2F8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F8Y from S2C, [Save to disk]
  • Re-refined 2f8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F8Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F8Y, from MSDmotif at EBI
  • Fold representative 2f8y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f8y] [2f8y_B] [2f8y_A]
  • SWISS-PROT database: [P46531]
  • Domain organization of [NOTC1_HUMAN] by SWISSPFAM
  • Domain found in 2F8Y: [ANK ] by SMART
  • Other resources with information on 2F8Y
  • Community annotation for 2F8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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