2FPZ Hydrolase date Jan 17, 2006
title Human Tryptase With 2-Amino Benzimidazole
authors J.R.Somoza
compound source
Molecule: Tryptase Beta-2
Chain: A, B, C, D
Synonym: Tryptase-2, Tryptase II
Ec: 3.4.21.59
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tpsb2, Tps2
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 31
R_factor 0.207 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.895 78.895 165.981 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand 270 enzyme Hydrolase E.C.3.4.21.59 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure-guided design of Peptide-based tryptase inhibitors., McGrath ME, Sprengeler PA, Hirschbein B, Somoza JR, Lehoux I, Janc JW, Gjerstad E, Graupe M, Estiarte A, Venkataramani C, Liu Y, Yee R, Ho JD, Green MJ, Lee CS, Liu L, Tai V, Spencer J, Sperandio D, Katz BA, Biochemistry. 2006 May 16;45(19):5964-73. PMID:16681368
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (2fpz.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 2FPZ
  • CSU: Contacts of Structural Units for 2FPZ
  • Likely Quarternary Molecular Structure file(s) for 2FPZ
  • Structure Factors (1014 Kb)
  • Retrieve 2FPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FPZ from S2C, [Save to disk]
  • Re-refined 2fpz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FPZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FPZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fpz_C] [2fpz] [2fpz_D] [2fpz_B] [2fpz_A]
  • SWISS-PROT database: [P20231]
  • Domain organization of [TRYB2_HUMAN] by SWISSPFAM
  • Domain found in 2FPZ: [Tryp_SPc ] by SMART
  • Other resources with information on 2FPZ
  • Community annotation for 2FPZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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