2FVP Transferase Dna date Jan 31, 2006
title A Structural Study Of The Ca Dinucleotide Step In The Integr Processing Site Of Moloney Murine Leukemia Virus
authors S.P.Montano, M.L.Cote, M.J.Roth, M.M.Georgiadis
compound source
Molecule: 5'-D(Tptptpcpaptptpgpcpapaptpgpapa
Chain: B
Engineered: Yes
 Synthetic: Yes

Molecule: Reverse Transcriptase
Chain: A
Synonym: Rt
Ec: 2.7.7.49
Engineered: Yes
Organism_scientific: Moloney Murine Leukemia Virus
Organism_taxid: 11801
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 2
R_factor 0.224 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.720 146.126 46.863 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand
enzyme Transferase E.C.2.7.7.49 BRENDA
Primary referenceCrystal structures of oligonucleotides including the integrase processing site of the Moloney murine leukemia virus., Montano SP, Cote ML, Roth MJ, Georgiadis MM, Nucleic Acids Res. 2006;34(19):5353-60. Epub 2006 Sep 26. PMID:17003051
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2fvp.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 2FVP
  • Likely Quarternary Molecular Structure file(s) for 2FVP
  • Structure Factors (148 Kb)
  • Retrieve 2FVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FVP from S2C, [Save to disk]
  • Re-refined 2fvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FVP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FVP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fvp] [2fvp_A] [2fvp_B]
  • SWISS-PROT database: [P03355]
  • Domain organization of [POL_MLVMO] by SWISSPFAM
    • Other resources with information on 2FVP
  • Community annotation for 2FVP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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