2G9D Hydrolase date Mar 06, 2006
title Crystal Structure Of Succinylglutamate Desuccinylase From Vi Cholerae, Northeast Structural Genomics Target Vcr20
authors W.Zhou, S.Jayaraman, F.Forouhar, K.Conover, X.Rong, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomic Consortium (Nesg)
compound source
Molecule: Succinylglutamate Desuccinylase
Chain: A
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Vibrio Cholerae
Organism_taxid: 345072
Strain: Mo10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 65
R_factor 0.241 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.934 82.934 116.665 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand MSE enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2g9d.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2G9D
  • CSU: Contacts of Structural Units for 2G9D
  • Likely Quarternary Molecular Structure file(s) for 2G9D
  • Structure Factors (314 Kb)
  • Retrieve 2G9D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G9D from S2C, [Save to disk]
  • Re-refined 2g9d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2G9D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2G9D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G9D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g9d_A] [2g9d]
  • SWISS-PROT database: [Q9KSL4]
  • Domain organization of [ASTE_VIBCH] by SWISSPFAM
    • Other resources with information on 2G9D
  • Community annotation for 2G9D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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