2GGT Chaperone date Mar 24, 2006
title Crystal Structure Of Human Sco1 Complexed With Nickel.
authors L.Banci, I.Bertini, V.Calderone, S.Ciofi-Baffoni, S.Mangani, M.Martinelli, P.Palumaa, S.Wang
compound source
Molecule: Sco1 Protein Homolog, Mitochondrial
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sco1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.461 52.444 136.411 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL, NI enzyme
Primary referenceA hint for the function of human Sco1 from different structures., Banci L, Bertini I, Calderone V, Ciofi-Baffoni S, Mangani S, Martinelli M, Palumaa P, Wang S, Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8595-600. Epub 2006 May 30. PMID:16735468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2ggt.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (2ggt.pdb2.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2GGT
  • CSU: Contacts of Structural Units for 2GGT
  • Likely Quarternary Molecular Structure file(s) for 2GGT
  • Structure Factors (464 Kb)
  • Retrieve 2GGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GGT from S2C, [Save to disk]
  • Re-refined 2ggt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GGT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GGT, from MSDmotif at EBI
  • Fold representative 2ggt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ggt_B] [2ggt] [2ggt_A]
  • SWISS-PROT database: [O75880]
  • Domain organization of [SCO1_HUMAN] by SWISSPFAM
  • Other resources with information on 2GGT
  • Community annotation for 2GGT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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