2GIL	Protein Transport	date	Mar 29, 2006
title	Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Boun 1.8 Resolution
authors	T.Bergbrede, O.Pylypenko, A.Rak, K.Alexandrov
compound		source
Molecule: Ras-Related Protein Rab-6a Chain: A, B, C, D Fragment: Rab6and12cd33 (Residues 12-173) Synonym: Rab-6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet19
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.008 124.853 66.162 90.00 107.57 90.00
method	X-Ray Diffraction	resolution	1.82 Å
ligand	GTP, MG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of the extremely slow GTPase Rab6A in the GTP bound form at 1.8A resolution., Bergbrede T, Pylypenko O, Rak A, Alexandrov K, J Struct Biol. 2005 Dec;152(3):235-8. Epub 2005 Nov 18. PMID:16332443

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (2gil.pdb1.gz) 32 Kb Biological Unit Coordinates (2gil.pdb2.gz) 32 Kb Biological Unit Coordinates (2gil.pdb3.gz) 32 Kb Biological Unit Coordinates (2gil.pdb4.gz) 32 Kb LPC: Ligand-Protein Contacts for 2GIL CSU: Contacts of Structural Units for 2GIL Likely Quarternary Molecular Structure file(s) for 2GIL Structure Factors (359 Kb) Retrieve 2GIL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GIL from S2C, [Save to disk] Re-refined 2gil structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GIL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GIL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GIL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gil] [2gil_C] [2gil_A] [2gil_B] [2gil_D] SWISS-PROT database: [P20340] Domain organization of [RAB6A_HUMAN] by SWISSPFAM Domain found in 2GIL: [RAB ] by SMART

Other resources with information on 2GIL

Community annotation for 2GIL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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