2GJT Hydrolase date Mar 31, 2006
title Crystal Structure Of The Human Receptor Phosphatase Ptpro
authors A.Barr, E.Ugochukwu, J.Eswaran, S.Das, F.Niesen, P.Savitsky, A.Tur M.Sundstrom, C.Arrowsmith, A.Edwards, J.Weigelt, F.Von Delft, E.Papagrigoriou, S.Knapp, Structural Genomics Consortium (Sgc
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Ptpro
Chain: A, B
Fragment: Residues 916-1208
Synonym: Glomerular Epithelial Protein 1, Protein Tyrosine Phosphatase U2, Ptpase U2, Ptp-U2;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpro, Glepp1, Ptpu2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 65
R_factor 0.179 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.060 131.060 77.530 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.15 Å
ligand CL enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (2gjt.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (2gjt.pdb2.gz) 48 Kb
  • Biological Unit Coordinates (2gjt.pdb3.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 2GJT
  • CSU: Contacts of Structural Units for 2GJT
  • Likely Quarternary Molecular Structure file(s) for 2GJT
  • Structure Factors (619 Kb)
  • Retrieve 2GJT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GJT from S2C, [Save to disk]
  • Re-refined 2gjt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GJT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GJT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GJT, from MSDmotif at EBI
  • Fold representative 2gjt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gjt_B] [2gjt_A] [2gjt]
  • SWISS-PROT database: [Q16827]
  • Domain organization of [PTPRO_HUMAN] by SWISSPFAM
  • Domain found in 2GJT: [PTPc ] by SMART
  • Other resources with information on 2GJT
  • Community annotation for 2GJT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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