2GLX	Oxidoreductase	date	Apr 05, 2006
title	Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
authors	T.R.Dambe, A.J.Scheidig
compound		source
Molecule: 1,5-Anhydro-D-Fructose Reductase Chain: A, B, C, D, E, F Synonym: 1,5-Af-Reductase Ec: 1.1.1.263 Engineered: Yes		Organism_scientific: Ensifer Adhaerens Organism_taxid: 106592 Strain: S-30.7.5 Gene: Afr Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24a
symmetry	Space Group: P 1 21 1	R_factor 0.190 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.190 84.900 150.940 90.00 96.30 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	ACT, NDP	enzyme	Oxidoreductase E.C.1.1.1.263 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Crystal Structure of NADP(H)-Dependent 1,5-Anhydro-d-fructose Reductase from Sinorhizobium morelense at 2.2 A Resolution: Construction of a NADH-Accepting Mutant and Its Application in Rare Sugar Synthesis(,)., Dambe TR, Kuhn AM, Brossette T, Giffhorn F, Scheidig AJ, Biochemistry. 2006 Aug 22;45(33):10030-42. PMID:16906761

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk] Biological Unit Coordinates (2glx.pdb1.gz) 61 Kb Biological Unit Coordinates (2glx.pdb2.gz) 60 Kb Biological Unit Coordinates (2glx.pdb3.gz) 58 Kb Biological Unit Coordinates (2glx.pdb4.gz) 56 Kb Biological Unit Coordinates (2glx.pdb5.gz) 60 Kb Biological Unit Coordinates (2glx.pdb6.gz) 57 Kb LPC: Ligand-Protein Contacts for 2GLX CSU: Contacts of Structural Units for 2GLX Likely Quarternary Molecular Structure file(s) for 2GLX Structure Factors (966 Kb) Retrieve 2GLX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GLX from S2C, [Save to disk] Re-refined 2glx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GLX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GLX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GLX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2glx_C] [2glx_A] [2glx_F] [2glx] [2glx_B] [2glx_E] [2glx_D] SWISS-PROT database: [Q2I8V6] Domain organization of [AFR_ENSAD] by SWISSPFAM

Other resources with information on 2GLX

Community annotation for 2GLX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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