2GMX Transcription date Apr 07, 2006
title Selective Aminopyridine-Based C-Jun N-Terminal Kinase Inhibitors With Cellular Activity
authors C.Abad-Zapatero
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A, B
Synonym: Stress-Activated Protein Kinase Jnk1, C-Jun N- Terminal Kinase 1, Jnk-46;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk8, Jnk1, Prkm8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pet28a

Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1;
Chain: F, G
Fragment: Pepjip1 Peptide
Synonym: Jnk-Interacting Protein 1, Jip-1, Jnk Map Kinase Scaffold Protein 1, Islet-Brain-1, Ib-1, Mitogen-Activated Protein Kinase 8-Interacting Protein 1;
Engineered: Yes

Synthetic: Yes
Other_details: The Sequence Is Found Naturally In Homo Sapiens (Human)
symmetry Space Group: P 32 2 1
R_factor 0.266 R_Free 0.351
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.786 150.786 118.660 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand 877, SO4 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAminopyridine-Based c-Jun N-Terminal Kinase Inhibitors with Cellular Activity and Minimal Cross-Kinase Activity., Szczepankiewicz BG, Kosogof C, Nelson LT, Liu G, Liu B, Zhao H, Serby MD, Xin Z, Liu M, Gum RJ, Haasch DL, Wang S, Clampit JE, Johnson EF, Lubben TH, Stashko MA, Olejniczak ET, Sun C, Dorwin SA, Haskins K, Abad-Zapatero C, Fry EH, Hutchins CW, Sham HL, Rondinone CM, Trevillyan JM, J Med Chem. 2006 Jun 15;49(12):3563-80. PMID:16759099
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (2gmx.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (2gmx.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (2gmx.pdb3.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 2GMX
  • CSU: Contacts of Structural Units for 2GMX
  • Likely Quarternary Molecular Structure file(s) for 2GMX
  • Retrieve 2GMX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GMX from S2C, [Save to disk]
  • View 2GMX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GMX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GMX, from MSDmotif at EBI
  • Fold representative 2gmx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gmx_G] [2gmx] [2gmx_A] [2gmx_B] [2gmx_F]
  • SWISS-PROT database: [Q9UQF2] [P45983]
  • Domain organization of [JIP1_HUMAN] [MK08_HUMAN] by SWISSPFAM
  • Domain found in 2GMX: [S_TKc ] by SMART
  • Alignments of the sequence of 2GMX with the sequences similar proteins can be viewed for 2GMX's classification [JIP1_HUMAN] [MK08_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [JIP1_HUMAN] [MK08_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2GMX
  • Community annotation for 2GMX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science