2GMX	Transcription	date	Apr 07, 2006
title	Selective Aminopyridine-Based C-Jun N-Terminal Kinase Inhibitors With Cellular Activity
authors	C.Abad-Zapatero
compound		source
Molecule: Mitogen-Activated Protein Kinase 8 Chain: A, B Synonym: Stress-Activated Protein Kinase Jnk1, C-Jun N- Terminal Kinase 1, Jnk-46; Ec: 2.7.11.24 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk8, Jnk1, Prkm8 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Pet28a
Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1; Chain: F, G Fragment: Pepjip1 Peptide Synonym: Jnk-Interacting Protein 1, Jip-1, Jnk Map Kinase Scaffold Protein 1, Islet-Brain-1, Ib-1, Mitogen-Activated Protein Kinase 8-Interacting Protein 1; Engineered: Yes		Synthetic: Yes Other_details: The Sequence Is Found Naturally In Homo Sapiens (Human)
symmetry	Space Group: P 32 2 1	R_factor 0.266 R_Free 0.351
crystal cell	length a length b length c angle alpha angle beta angle gamma 150.786 150.786 118.660 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	877, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Primary reference	Aminopyridine-Based c-Jun N-Terminal Kinase Inhibitors with Cellular Activity and Minimal Cross-Kinase Activity., Szczepankiewicz BG, Kosogof C, Nelson LT, Liu G, Liu B, Zhao H, Serby MD, Xin Z, Liu M, Gum RJ, Haasch DL, Wang S, Clampit JE, Johnson EF, Lubben TH, Stashko MA, Olejniczak ET, Sun C, Dorwin SA, Haskins K, Abad-Zapatero C, Fry EH, Hutchins CW, Sham HL, Rondinone CM, Trevillyan JM, J Med Chem. 2006 Jun 15;49(12):3563-80. PMID:16759099

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk] Biological Unit Coordinates (2gmx.pdb1.gz) 58 Kb Biological Unit Coordinates (2gmx.pdb2.gz) 58 Kb Biological Unit Coordinates (2gmx.pdb3.gz) 112 Kb LPC: Ligand-Protein Contacts for 2GMX CSU: Contacts of Structural Units for 2GMX Likely Quarternary Molecular Structure file(s) for 2GMX Retrieve 2GMX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GMX from S2C, [Save to disk]

View 2GMX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2GMX

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2GMX, from MSDmotif at EBI Fold representative 2gmx from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gmx_A] [2gmx_B] [2gmx_F] [2gmx_G] SWISS-PROT database: [Q9UQF2] [P45983] Domain organization of [JIP1_HUMAN] [MK08_HUMAN] by SWISSPFAM Domain found in 2GMX: [S_TKc ] by SMART Alignments of the sequence of 2GMX with the sequences similar proteins can be viewed for 2GMX's classification [JIP1_HUMAN] [MK08_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [JIP1_HUMAN] [MK08_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2GMX

Community annotation for 2GMX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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