2GOO Transferase date Apr 13, 2006
title Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And Actrii-Ecd
authors G.P.Allendorph, S.Choe
compound source
Molecule: Bone Morphogenetic Protein 2
Chain: A, D
Fragment: Residues 283-396
Synonym: Bmp-2, Bmp-2a
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bone Morphogenetic Protein Receptor Type Ia
Chain: B, E
Fragment: Residues 24-152
Synonym: Serinethreonine-Protein Kinase Receptor R5, Skr5, Activin Receptor-Like Kinase 3, Alk-3, Cd292 Antigen;
Ec: 2.7.11.30
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmpr1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Activin Receptor Type 2a
Chain: C, F
Fragment: Residues 20-121
Synonym: Activin Receptor Type Iia, Actr-Iia
Ec: 2.7.11.30
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Acvr2a
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 65 2 2
R_factor 0.222 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.031 104.031 362.526 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand NDG enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


F, C


Primary referenceStructure of the ternary signaling complex of a TGF-beta superfamily member., Allendorph GP, Vale WW, Choe S, Proc Natl Acad Sci U S A. 2006 May 16;103(20):7643-8. Epub 2006 May 3. PMID:16672363
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (2goo.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 2GOO
  • CSU: Contacts of Structural Units for 2GOO
  • Likely Quarternary Molecular Structure file(s) for 2GOO
  • Structure Factors (446 Kb)
  • Retrieve 2GOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GOO from S2C, [Save to disk]
  • Re-refined 2goo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GOO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GOO, from MSDmotif at EBI
  • Fold representative 2goo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2goo_E] [2goo_A] [2goo_F] [2goo_B] [2goo] [2goo_C] [2goo_D]
  • SWISS-PROT database: [P27038] [P12643] [P36894]
  • Domain organization of [AVR2A_MOUSE] [BMP2_HUMAN] [BMR1A_HUMAN] by SWISSPFAM
  • Domain found in 2GOO: [TGFB ] by SMART
  • Alignments of the sequence of 2GOO with the sequences similar proteins can be viewed for 2GOO's classification [AVR2A_MOUSE] [BMP2_HUMAN] [BMR1A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AVR2A_MOUSE] [BMP2_HUMAN] [BMR1A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2GOO
  • Community annotation for 2GOO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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