OCA Atlas for 2GTL

2GTL

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, CMO, HEM, ZN

enzyme

note

2GTL (Molecule of the Month:pdb159)is a representative structure

Gene
Ontology

Chain	Function	Process	Component
J, F, B
K, E, C, A, G, I
L, H, D
M, O

Primary reference

Lumbricus erythrocruorin at 3.5 A resolution: architecture of a megadalton respiratory complex., Royer WE Jr, Sharma H, Strand K, Knapp JE, Bhyravbhatla B, Structure. 2006 Jul;14(7):1167-77. PMID:16843898

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]

Biological Unit Coordinates (2gtl.pdb1.gz) 4266 Kb

LPC: Ligand-Protein Contacts for 2GTL

CSU: Contacts of Structural Units for 2GTL

Likely Quarternary Molecular Structure file(s) for 2GTL

Structure Factors (13551 Kb)

Retrieve 2GTL in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2GTL from S2C, [Save to disk]

Re-refined 2gtl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GTL in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gtl] [2gtl_A] [2gtl_B] [2gtl_C] [2gtl_D] [2gtl_E] [2gtl_F] [2gtl_G] [2gtl_H] [2gtl_I] [2gtl_J] [2gtl_K] [2gtl_L] [2gtl_M] [2gtl_N] [2gtl_O]

SWISS-PROT database: [P02218] [P11069] [P13579] [O61233] [Q2I742] [Q2I743] [Q9GV76]

Domain found in 2GTL: [LDLa ] by SMART

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