2GV9 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GAI, HG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • endonuclease activity
  • RNA-DNA hybrid ribonuclease ...


  • Primary referenceCrystal structure of the herpes simplex virus 1 DNA polymerase., Liu S, Knafels JD, Chang JS, Waszak GA, Baldwin ET, Deibel MR Jr, Thomsen DR, Homa FL, Wells PA, Tory MC, Poorman RA, Gao H, Qiu X, Seddon AP, J Biol Chem. 2006 Jun 30;281(26):18193-200. Epub 2006 Apr 24. PMID:16638752
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk]
  • Biological Unit Coordinates (2gv9.pdb1.gz) 155 Kb
  • Biological Unit Coordinates (2gv9.pdb2.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 2GV9
  • CSU: Contacts of Structural Units for 2GV9
  • Likely Quarternary Molecular Structure file(s) for 2GV9
  • Structure Factors (3984 Kb)
  • Retrieve 2GV9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GV9 from S2C, [Save to disk]
  • Re-refined 2gv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GV9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gv9] [2gv9_A] [2gv9_B]
  • SWISS-PROT database: [P04292]
  • Domain found in 2GV9: [POLBc ] by SMART

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