2H16 Transport Protein date May 16, 2006
title Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
authors W.M.Rabeh, W.Tempel, D.Yaniw, C.H.Arrowsmith, A.M.Edwards, M.Sund J.Weigelt, A.Bochkarev, H.Park, Structural Genomics Consortium
compound source
Molecule: Adp-Ribosylation Factor-Like Protein 5a
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arl5a, Arflp5, Arl5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Lic
symmetry Space Group: P 43 21 2
R_factor 0.204 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.624 94.624 214.836 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GDP, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2h16.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 2H16
  • CSU: Contacts of Structural Units for 2H16
  • Likely Quarternary Molecular Structure file(s) for 2H16
  • Structure Factors (975 Kb)
  • Retrieve 2H16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H16 from S2C, [Save to disk]
  • Re-refined 2h16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H16
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H16, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h16_C] [2h16_A] [2h16] [2h16_B] [2h16_D]
  • SWISS-PROT database: [Q9Y689]
  • Domain organization of [ARL5A_HUMAN] by SWISSPFAM
  • Domains found in 2H16: [ARF] [small_GTPase ] by SMART
    • Other resources with information on 2H16
  • Community annotation for 2H16 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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