2H8K Transferase date Jun 07, 2006
title Human Sulfotranferase Sult1c3 In Complex With Pap
authors W.Tempel, L.Dombrovski, P.Loppnau, J.Weigelt, M.Sundstrom, C.H.Ar A.M.Edwards, A.Bochkarev, A.N.Plotnikov, Structural Genomics C (Sgc)
compound source
Molecule: Sult1c3 Splice Variant D
Chain: A, B
Ec: 2.8.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sult1c3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 2 2 21
R_factor 0.292 R_Free 0.342
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.161 108.717 136.925 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand A3P enzyme Transferase E.C.2.8.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and chemical profiling of the human cytosolic sulfotransferases., Allali-Hassani A, Pan PW, Dombrovski L, Najmanovich R, Tempel W, Dong A, Loppnau P, Martin F, Thornton J, Edwards AM, Bochkarev A, Plotnikov AN, Vedadi M, Arrowsmith CH, PLoS Biol. 2007 May;5(5):e97. PMID:17425406
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2h8k.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 2H8K
  • CSU: Contacts of Structural Units for 2H8K
  • Likely Quarternary Molecular Structure file(s) for 2H8K
  • Structure Factors (175 Kb)
  • Retrieve 2H8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H8K from S2C, [Save to disk]
  • Re-refined 2h8k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H8K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H8K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h8k] [2h8k_A] [2h8k_B]
  • SWISS-PROT database: [Q6IMI6]
  • Domain organization of [ST1C3_HUMAN] by SWISSPFAM
  • Other resources with information on 2H8K
  • Community annotation for 2H8K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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