2HRE Lyase date Jul 20, 2006
title Structure Of Human Ferrochelatase Variant E343k With Protoporphyrin Ix Bound
authors A.Medlock, L.Swartz, T.A.Dailey, H.A.Dailey, W.N.Lanzilotta
compound source
Molecule: Ferrochelatase
Chain: A, B, C, D
Synonym: Protoheme Ferro-Lyase, Heme Synthetase
Ec: 4.99.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fech
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Ptrchis
Other_details: Plasmid
symmetry Space Group: P 1
R_factor 0.216 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.952 88.388 93.253 102.41 109.34 105.58
method X-Ray Diffractionresolution 2.50 Å
ligand CHD, FES, PP9 enzyme Lyase E.C.4.99.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSubstrate interactions with human ferrochelatase., Medlock A, Swartz L, Dailey TA, Dailey HA, Lanzilotta WN, Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1789-93. Epub 2007 Jan 29. PMID:17261801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (2hre.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (2hre.pdb2.gz) 125 Kb
  • Biological Unit Coordinates (2hre.pdb3.gz) 245 Kb
  • LPC: Ligand-Protein Contacts for 2HRE
  • CSU: Contacts of Structural Units for 2HRE
  • Likely Quarternary Molecular Structure file(s) for 2HRE
  • Structure Factors (842 Kb)
  • Retrieve 2HRE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HRE from S2C, [Save to disk]
  • Re-refined 2hre structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HRE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HRE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HRE, from MSDmotif at EBI
  • Fold representative 2hre from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hre_A] [2hre_B] [2hre_D] [2hre_C] [2hre]
  • SWISS-PROT database: [P22830]
  • Domain organization of [HEMH_HUMAN] by SWISSPFAM
  • Other resources with information on 2HRE
  • Community annotation for 2HRE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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