2I35 Membrane Protein date Aug 17, 2006
title Crystal Structure Of Rhombohedral Crystal Form Of Ground-Sta Rhodopsin
authors R.E.Stenkamp, I.Le Trong, D.T.Lodowski, D.Salom, K.Palczewski
compound source
Molecule: Rhodopsin
Chain: A
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: H 3 2
R_factor 0.373 R_Free 0.418
crystal
cell
length a length b length c angle alpha angle beta angle gamma
277.534 277.534 66.321 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.80 Å
ligand ACE, BMA, NAG, PLM, RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a photoactivated deprotonated intermediate of rhodopsin., Salom D, Lodowski DT, Stenkamp RE, Trong IL, Golczak M, Jastrzebska B, Harris T, Ballesteros JA, Palczewski K, Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16123-8. Epub 2006 Oct 23. PMID:17060607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2i35.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2I35
  • CSU: Contacts of Structural Units for 2I35
  • Likely Quarternary Molecular Structure file(s) for 2I35
  • Structure Factors (147 Kb)
  • Retrieve 2I35 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I35 from S2C, [Save to disk]
  • Re-refined 2i35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2I35 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2I35
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2I35, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i35_A] [2i35]
  • SWISS-PROT database: [P02699]
  • Domain organization of [OPSD_BOVIN] by SWISSPFAM
    • Other resources with information on 2I35
  • Community annotation for 2I35 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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