2IJ9 Transferase date Sep 29, 2006
title Crystal Structure Of Uridylate Kinase From Archaeoglobus Ful
authors Y.Patskovsky, R.Chen, L.J.Keefe, J.M.Sauder, M.Dickey, J.M.Adams, S.R.Wasserman, S.K.Burley, S.C.Almo, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Uridylate Kinase
Chain: A, B
Synonym: Uk, Uridine Monophosphate Kinase, Ump Kinase, Puta Dehydratase Protein;
Ec: 2.7.4.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 224325
Strain: Dsm 4304
Gene: Pyrh, Af_2042
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 43 2 2
R_factor 0.283 R_Free 0.330
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.277 94.277 186.672 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand SO4 enzyme Transferase E.C.2.7.4 BRENDA
Gene AF
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • uridylate kinase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2ij9.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2IJ9
  • CSU: Contacts of Structural Units for 2IJ9
  • Likely Quarternary Molecular Structure file(s) for 2IJ9
  • Structure Factors (209 Kb)
  • Retrieve 2IJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IJ9 from S2C, [Save to disk]
  • Re-refined 2ij9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IJ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IJ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ij9_A] [2ij9] [2ij9_B]
  • SWISS-PROT database: [O28237]
  • Domain organization of [PYRH_ARCFU] by SWISSPFAM
  • Other resources with information on 2IJ9
  • Community annotation for 2IJ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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