2IJZ Hydrolase date Oct 02, 2006
title Crystal Structure Of Aminopeptidase
authors T.Min, S.K.Burley, L.Shapiro, New York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Probable M18-Family Aminopeptidase 2
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Ec: 3.4.11.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Apeb
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Topo
symmetry Space Group: P 1
R_factor 0.255 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.678 134.553 134.601 60.12 60.10 60.16
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Hydrolase E.C.3.4.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (667 Kb) [Save to disk]
  • Biological Unit Coordinates (2ijz.pdb1.gz) 659 Kb
  • CSU: Contacts of Structural Units for 2IJZ
  • Likely Quarternary Molecular Structure file(s) for 2IJZ
  • Structure Factors (2694 Kb)
  • Retrieve 2IJZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IJZ from S2C, [Save to disk]
  • Re-refined 2ijz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IJZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IJZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IJZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ijz] [2ijz_E] [2ijz_B] [2ijz_H] [2ijz_D] [2ijz_G] [2ijz_A] [2ijz_K] [2ijz_F] [2ijz_J] [2ijz_L] [2ijz_C] [2ijz_I]
  • SWISS-PROT database: [Q9HYZ3]
  • Domain organization of [APEB_PSEAE] by SWISSPFAM
  • Other resources with information on 2IJZ
  • Community annotation for 2IJZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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