2J3W	Transport	date	Aug 23, 2006
title	The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
authors	Y.G.Kim, B.H.Oh
compound		source
Molecule: Trafficking Protein Particle Complex Protein 2 Chain: A, C Synonym: Sedlin Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pproexhta, Pet15b, Pet30a
Molecule: Zgc 92866 Chain: B, F Engineered: Yes		Organism_scientific: Brachydanio Rerio Organism_common: Zebrafish Organism_taxid: 7955 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pproexhta, Pet15b, Pet30a
Molecule: Trafficking Protein Particle Complex Subunit 3 Chain: D, E Synonym: Bet3 Homolog Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pproexhta, Pet15b, Pet30a
symmetry	Space Group: C 1 2 1	R_factor 0.2296 R_Free 0.2765
crystal cell	length a length b length c angle alpha angle beta angle gamma 232.211 63.063 72.018 90.00 91.72 90.00
method	X-Ray Diffraction	resolution	2.1 Å
ligand	PLM	enzyme
note	2J3W is a representative structure
Gene Ontology	Chain Function Process Component A, C D, E F, B
Primary reference	The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering., Kim YG, Raunser S, Munger C, Wagner J, Song YL, Cygler M, Walz T, Oh BH, Sacher M, Cell. 2006 Nov 17;127(4):817-30. PMID:17110339

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk] Biological Unit Coordinates (2j3w.pdb1.gz) 77 Kb Biological Unit Coordinates (2j3w.pdb2.gz) 79 Kb LPC: Ligand-Protein Contacts for 2J3W CSU: Contacts of Structural Units for 2J3W Likely Quarternary Molecular Structure file(s) for 2J3W Structure Factors (665 Kb) Retrieve 2J3W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J3W from S2C, [Save to disk] Re-refined 2j3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J3W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J3W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J3W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j3w_C] [2j3w_B] [2j3w] [2j3w_F] [2j3w_E] [2j3w_A] [2j3w_D] SWISS-PROT database: [Q6DGL5] [Q9CQP2] [O55013] Domain organization of [Q6DGL5_DANRE] [TPPC2_MOUSE] [TPPC3_MOUSE] by SWISSPFAM

Other resources with information on 2J3W

Community annotation for 2J3W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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