2J5C Lyase date Sep 14, 2006
title Rational Conversion Of Substrate And Product Specificity In Monoterpene Synthase. Structural Insights Into The Molecula Rapid Evolution.
authors S.C.Kampranis, D.Ioannidis, A.Purvis, W.Mahrez, E.Ninga, N.A.Kate S.Anssour, J.M.Dunwell, A.M.Makris, P.W.Goodenough, C.B.Johnson
compound source
Molecule: 1,8-Cineole Synthase
Chain: A, B
Fragment: Residues 58-591
Ec: 4.2.3.-
Engineered: Yes
Organism_scientific: Salvia Fruticosa
Organism_common: Greek Sage
Organism_taxid: 268906
Strain: M. Skoula 824 (Tuccg)
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset
Other_details: Wild Source Found In Nio Chorio, Chania, Cre Greece
symmetry Space Group: C 2 2 21
R_factor 0.218 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.550 171.150 123.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand BME enzyme Lyase E.C.4.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRational Conversion of Substrate and Product Specificity in a Salvia Monoterpene Synthase: Structural Insights into the Evolution of Terpene Synthase Function., Kampranis SC, Ioannidis D, Purvis A, Mahrez W, Ninga E, Katerelos NA, Anssour S, Dunwell JM, Degenhardt J, Makris AM, Goodenough PW, Johnson CB, Plant Cell. 2007 Jun 8;. PMID:17557809
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (2j5c.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (2j5c.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 2J5C
  • CSU: Contacts of Structural Units for 2J5C
  • Likely Quarternary Molecular Structure file(s) for 2J5C
  • Structure Factors (812 Kb)
  • Retrieve 2J5C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J5C from S2C, [Save to disk]
  • Re-refined 2j5c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J5C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J5C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J5C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j5c] [2j5c_B] [2j5c_A]
  • SWISS-PROT database: [A6XH05]
  • Domain organization of [A6XH05_9LAMI] by SWISSPFAM
  • Other resources with information on 2J5C
  • Community annotation for 2J5C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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