2J6L Oxidoreductase date Sep 29, 2006
title Structure Of Aminoadipate-Semialdehyde Dehydrogenase
authors G.Bunkoczi, K.Guo, J.E.Debreczeni, C.Smee, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, F.Von Delft, U.Oppermann
compound source
Molecule: Aldehyde Dehydrogenase Family 7 Member A1
Chain: A, B, C, D, E, F, G, H
Synonym: Antiquitin-1, Aminoadipate-Semialdehyde Dehydrogenase;
Ec: 1.2.1.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_cell_line: De3-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.137 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.289 162.326 159.016 90.00 94.17 90.00
method X-Ray Diffractionresolution 1.3 Å
ligand BR, NA, NAI enzyme Oxidoreductase E.C.1.2.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1458 Kb) [Save to disk]
  • Biological Unit Coordinates (2j6l.pdb1.gz) 725 Kb
  • Biological Unit Coordinates (2j6l.pdb2.gz) 733 Kb
  • LPC: Ligand-Protein Contacts for 2J6L
  • CSU: Contacts of Structural Units for 2J6L
  • Likely Quarternary Molecular Structure file(s) for 2J6L
  • Structure Factors (11526 Kb)
  • Retrieve 2J6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J6L from S2C, [Save to disk]
  • Re-refined 2j6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J6L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J6L, from MSDmotif at EBI
  • Fold representative 2j6l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j6l_B] [2j6l_E] [2j6l_D] [2j6l_F] [2j6l_H] [2j6l_A] [2j6l_G] [2j6l] [2j6l_C]
  • SWISS-PROT database: [P49419]
  • Domain organization of [AL7A1_HUMAN] by SWISSPFAM
  • Other resources with information on 2J6L
  • Community annotation for 2J6L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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