2J6L	Oxidoreductase	date	Sep 29, 2006
title	Structure Of Aminoadipate-Semialdehyde Dehydrogenase
authors	G.Bunkoczi, K.Guo, J.E.Debreczeni, C.Smee, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, F.Von Delft, U.Oppermann
compound		source
Molecule: Aldehyde Dehydrogenase Family 7 Member A1 Chain: A, B, C, D, E, F, G, H Synonym: Antiquitin-1, Aminoadipate-Semialdehyde Dehydrogenase; Ec: 1.2.1.3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_cell_line: De3-R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: C 1 2 1	R_factor 0.137 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 155.289 162.326 159.016 90.00 94.17 90.00
method	X-Ray Diffraction	resolution	1.3 Å
ligand	BR, NA, NAI	enzyme	Oxidoreductase E.C.1.2.1.3 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G aldehyde dehydrogenase (NAD)... L-aminoadipate-semialdehyde ... protein binding betaine-aldehyde dehydrogena... oxidoreductase activity cellular aldehyde metabolic ... lysine catabolic process sensory perception of sound glycine betaine biosynthetic... cellular nitrogen compound m... small molecule metabolic pro... oxidation-reduction process nucleus cytoplasm mitochondrion mitochondrial matrix cytosol

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1458 Kb) [Save to disk] Biological Unit Coordinates (2j6l.pdb1.gz) 725 Kb Biological Unit Coordinates (2j6l.pdb2.gz) 733 Kb LPC: Ligand-Protein Contacts for 2J6L CSU: Contacts of Structural Units for 2J6L Likely Quarternary Molecular Structure file(s) for 2J6L Structure Factors (11526 Kb) Retrieve 2J6L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J6L from S2C, [Save to disk] Re-refined 2j6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J6L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2J6L

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2J6L, from MSDmotif at EBI Fold representative 2j6l from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j6l_A] [2j6l_B] [2j6l_C] [2j6l_D] [2j6l_E] [2j6l_F] [2j6l_G] [2j6l_H] SWISS-PROT database: [P49419] Domain organization of [AL7A1_HUMAN] by SWISSPFAM Alignments of the sequence of 2J6L with the sequences similar proteins can be viewed for 2J6L's classification [AL7A1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AL7A1_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2J6L

Community annotation for 2J6L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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