2J8Z Oxidoreductase date Oct 31, 2006
title Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp5
authors A.C.W.Pike, N.Shafqat, J.Debreczeni, C.Johansson, A.Haroniti, O.G C.H.Arrowsmith, A.Edwards, J.Weigelt, M.Sundstrom, F.Von Delft, I.Fita, J.Pares, X.Pares, U.Oppermann
compound source
Molecule: Quinone Oxidoreductase
Chain: A
Synonym: Tumor Protein P53-Inducible Protein 3, P53-Induced 3;
Ec: 1.-.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 43 2 2
R_factor 0.226 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.860 46.860 315.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand NAP enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure and enzymatic function of proapoptotic human p53-inducible quinone oxidoreductase pig3., Porte S, Valencia E, Yakovtseva EA, Borras E, Shafqat N, Debreczeny JE, Pike AC, Oppermann U, Farres J, Fita I, Pares X, J Biol Chem. 2009 Apr 5. PMID:19349281
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2j8z.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2J8Z
  • CSU: Contacts of Structural Units for 2J8Z
  • Likely Quarternary Molecular Structure file(s) for 2J8Z
  • Structure Factors (95 Kb)
  • Retrieve 2J8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J8Z from S2C, [Save to disk]
  • Re-refined 2j8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2J8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J8Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J8Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j8z_A] [2j8z]
  • SWISS-PROT database: [Q53FA7]
  • Domain organization of [QORX_HUMAN] by SWISSPFAM
    • Other resources with information on 2J8Z
  • Community annotation for 2J8Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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