OCA Atlas for 2JDQ

2JDQ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

note

2JDQ is a representative structure

Gene
Ontology

Chain	Function	Process	Component
B, A
E, D

Primary reference

Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit., Tarendeau F, Boudet J, Guilligay D, Mas PJ, Bougault CM, Boulo S, Baudin F, Ruigrok RW, Daigle N, Ellenberg J, Cusack S, Simorre JP, Hart DJ, Nat Struct Mol Biol. 2007 Mar;14(3):229-33. Epub 2007 Feb 25. PMID:17310249

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]

Biological Unit Coordinates (2jdq.pdb1.gz) 78 Kb

Biological Unit Coordinates (2jdq.pdb2.gz) 78 Kb

CSU: Contacts of Structural Units for 2JDQ

Likely Quarternary Molecular Structure file(s) for 2JDQ

Structure Factors (548 Kb)

Retrieve 2JDQ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2JDQ from S2C, [Save to disk]

Re-refined 2jdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JDQ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jdq] [2jdq_A] [2jdq_B] [2jdq_D] [2jdq_E]

SWISS-PROT database: [P52294] [P31345]

Belongs to the eukaryotic nuclear pore complex (e-npc) family

according to TCDB.

Domain found in 2JDQ: [ARM ] by SMART

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