2JDR Transferase date Jan 12, 2007
title Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor A- 443654
authors T.G.Davies, M.L.Verdonk, B.Graham, S.Saalau-Bethell, C.C.F.Hamlett, T.Mchardy, I.Collins, M.D.Garrett, P.Workman, S.J.Woodhead, H.Jhoti, D.Barford
compound source
Molecule: Rac-Beta Serinethreonine-Protein Kinase
Chain: A
Fragment: Kinase Catalytic Domain, Residues 146-467
Synonym: Rac-Pk-Beta, Protein Kinase Akt-2, Protein Kinase B, Beta, Pkb Beta, Protein Kinase B-Beta;
Ec: 2.7.11.1
Engineered: Yes
Other_details: Piftide Sequence (Eeqemfedfdyiadw) Replaces Natural Pkb Sequence After Residue 464;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Glycogen Synthase Kinase-3 Beta
Chain: C
Fragment: Residues 3-12
Synonym: Gsk3-Beta Peptide, Gsk-3 Beta
Ec: 2.7.11.26
Other_details: Peptide Derived From The Kinase Gsk3-Beta

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.927 60.994 124.963 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.3 Å
ligand L20, TPO BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA structural comparison of inhibitor binding to PKB, PKA and PKA-PKB chimera., Davies TG, Verdonk ML, Graham B, Saalau-Bethell S, Hamlett CC, McHardy T, Collins I, Garrett MD, Workman P, Woodhead SJ, Jhoti H, Barford D, J Mol Biol. 2007 Mar 30;367(3):882-94. Epub 2007 Jan 9. PMID:17275837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2jdr.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2JDR
  • CSU: Contacts of Structural Units for 2JDR
  • Likely Quarternary Molecular Structure file(s) for 2JDR
  • Structure Factors (109 Kb)
  • Retrieve 2JDR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JDR from S2C, [Save to disk]
  • Re-refined 2jdr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JDR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JDR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JDR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jdr_A] [2jdr] [2jdr_C]
  • SWISS-PROT database: [P31751] [P49841]
  • Domain organization of [AKT2_HUMAN] [GSK3B_HUMAN] by SWISSPFAM
  • Domains found in 2JDR: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 2JDR
  • Community annotation for 2JDR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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