2JFE Hydrolase date Jan 31, 2007
title The Crystal Structure Of Human Cytosolic Beta-Glucosidase
authors M.Czjzek, S.Tribolo, J.G.Berrin, P.A.Kroon, N.Juge
compound source
Molecule: Cytosolic Beta-Glucosidase
Chain: X
Synonym: Human Cytosolic Beta-Glucosidase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Cytosolic
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: (His4)Gs115
Expression_system_vector: Phil-S1
Expression_system_plasmid: Phil-S1cbg-1
symmetry Space Group: P 31 2 1
R_factor 0.197 R_Free 0.280
length a length b length c angle alpha angle beta angle gamma
90.479 90.479 127.925 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.7 Å
ligand NAG enzyme Hydrolase E.C. BRENDA

Primary referenceThe Crystal Structure of Human Cytosolic beta-Glucosidase Unravels the Substrate Aglycone Specificity of a Family 1 Glycoside Hydrolase., Tribolo S, Berrin JG, Kroon PA, Czjzek M, Juge N, J Mol Biol. 2007 Jul 27;370(5):964-75. Epub 2007 May 18. PMID:17555766
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (2jfe.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 2JFE
  • CSU: Contacts of Structural Units for 2JFE
  • Likely Quarternary Molecular Structure file(s) for 2JFE
  • Structure Factors (127 Kb)
  • Retrieve 2JFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JFE from S2C, [Save to disk]
  • Re-refined 2jfe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JFE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JFE, from MSDmotif at EBI
  • Fold representative 2jfe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jfe] [2jfe_X]
  • SWISS-PROT database: [Q9H227]
  • Domain organization of [GBA3_HUMAN] by SWISSPFAM
  • Other resources with information on 2JFE
  • Community annotation for 2JFE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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