2JID Hydrolase date Feb 28, 2007
title Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-Dimetho -3-M-Tolyl-Piperidine-4-Ylamine
authors M.Hennig, M.Stihle, T.Luebbers, R.Thoma
compound source
Molecule: Dipeptidyl Peptidase 4
Chain: A, B
Fragment: Residues 31-766
Synonym: Dipeptidyl Peptidase Iv, Dpp Iv, T-Cell Activation Cd26, Tp103, Adenosine Deaminase Complexing Protein 2, Adab
Ec: 3.4.14.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.251 66.821 423.948 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand GVB, NAG enzyme Hydrolase E.C.3.4.14.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • virus receptor activity
  • chemorepellent activity


  • Primary reference1,3-disubstituted 4-aminopiperidines as useful tools in the optimization of the 2-aminobenzo[a]quinolizine dipeptidyl peptidase IV inhibitors., Lubbers T, Bohringer M, Gobbi L, Hennig M, Hunziker D, Kuhn B, Loffler B, Mattei P, Narquizian R, Peters JU, Ruff Y, Wessel HP, Wyss P, Bioorg Med Chem Lett. 2007 Jun 1;17(11):2966-70. Epub 2007 Mar 25. PMID:17418568
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (2jid.pdb1.gz) 238 Kb
  • LPC: Ligand-Protein Contacts for 2JID
  • CSU: Contacts of Structural Units for 2JID
  • Likely Quarternary Molecular Structure file(s) for 2JID
  • Retrieve 2JID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JID from S2C, [Save to disk]
  • View 2JID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JID
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JID, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jid_B] [2jid_A] [2jid]
  • SWISS-PROT database: [P27487]
  • Domain organization of [DPP4_HUMAN] by SWISSPFAM
  • Other resources with information on 2JID
  • Community annotation for 2JID at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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