2JJD Hydrolase date Mar 31, 2008
title Protein Tyrosine Phosphatase, Receptor Type, E Isoform
authors J.M.Elkins, E.Ugochukwu, I.Alfano, A.J.Barr, G.Bunkoczi, O.N.F.Ki P.Filippakopoulos, P.Savitsky, E.Salah, A.Pike, C.Johansson, S.D N.A.Burgess-Brown, O.Gileadi, F.Von Delft, C.H.Arrowsmith, C.Bo A.M.Edwards, S.Knapp
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Epsilo
Chain: A, B, C, D, E, F
Fragment: Residues 107-697
Synonym: Protein-Tyrosine Phosphatase Epsilon, R-Ptp -Epsil Protein Tyrosine Phosphatase, Receptor Type, E Isoform;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Ch
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.020 123.616 219.116 90.00 91.13 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand CL enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (475 Kb) [Save to disk]
  • Biological Unit Coordinates (2jjd.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (2jjd.pdb2.gz) 83 Kb
  • Biological Unit Coordinates (2jjd.pdb3.gz) 83 Kb
  • Biological Unit Coordinates (2jjd.pdb4.gz) 83 Kb
  • Biological Unit Coordinates (2jjd.pdb5.gz) 83 Kb
  • Biological Unit Coordinates (2jjd.pdb6.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 2JJD
  • CSU: Contacts of Structural Units for 2JJD
  • Likely Quarternary Molecular Structure file(s) for 2JJD
  • Structure Factors (2049 Kb)
  • Retrieve 2JJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JJD from S2C, [Save to disk]
  • Re-refined 2jjd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JJD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JJD, from MSDmotif at EBI
  • Fold representative 2jjd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jjd_E] [2jjd_D] [2jjd_B] [2jjd_F] [2jjd] [2jjd_C] [2jjd_A]
  • SWISS-PROT database: [P23469]
  • Domain organization of [PTPRE_HUMAN] by SWISSPFAM
  • Domain found in 2JJD: [PTPc ] by SMART
  • Other resources with information on 2JJD
  • Community annotation for 2JJD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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