2JLB Transferase date Sep 07, 2008
title Xanthomonas Campestris Putative Ogt (Xcc0866), Complex With Glcnac Phosphonate Analogue
authors A.W.Schuettelkopf, A.J.Clarke, D.M.F.Van Aalten
compound source
Molecule: Xcc0866
Chain: A, B
Engineered: Yes
 Organism_scientific: Xanthomonas Campestris Pv. Campestris
Organism_taxid: 340
Atcc: 33913
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.860 100.527 154.521 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CL, MN, UDM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into mechanism and specificity of O-GlcNAc transferase., Clarke AJ, Hurtado-Guerrero R, Pathak S, Schuttelkopf AW, Borodkin V, Shepherd SM, Ibrahim AF, van Aalten DM, EMBO J. 2008 Oct 22;27(20):2780-8. Epub 2008 Sep 25. PMID:18818698
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (2jlb.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (2jlb.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 2JLB
  • CSU: Contacts of Structural Units for 2JLB
  • Likely Quarternary Molecular Structure file(s) for 2JLB
  • Structure Factors (612 Kb)
  • Retrieve 2JLB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JLB from S2C, [Save to disk]
  • Re-refined 2jlb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JLB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JLB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JLB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jlb] [2jlb_A] [2jlb_B]
  • SWISS-PROT database: [Q8PC69]
  • Domain organization of [Q8PC69_XANCP] by SWISSPFAM
  • Domain found in 2JLB: [TPR ] by SMART
    • Other resources with information on 2JLB
  • Community annotation for 2JLB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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